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Learning Center, Train on Affymetrix Tools and Instruments Learning Center Overview
Learning Center, Command Console Software Series Command Console®
Learning Center, Newark NJ - Data Analysis Workshops Data Analysis Workshops
Learning Center, Genotyping Console Software Series Genotyping Console®
Learning Center, Genotyping Console Software Series NetAffx® Learning Center
Learning Center, GTYPE 4.1 Software Overview Mapping 500k Assay
Learning Center, GTYPE 4.1 Software Overview WT Assay Tutorial
Tiling Analysis Software Tutorial Tiling Analysis Software Tutorial
Learning Center, Expression Data Analysis Series Expression Data
Analysis Series
SERVICE SUPPORT
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Technical Notes
GENECHIP ARRAYS
DNA Analysis Arrays
Associating Copy Number and SNP Variation with Human Disease (pdf, 1.63 MB)
CustomSeq® Resequencing Array Base Calling Algorithm Version 2.0 (pdf, 213 KB)
SNP Concordance Across Affymetrix Genotyping Arrays (pdf, 168 KB)
Gene Expression Analysis Arrays
An Analysis of Blood Processing Methods to Prepare Samples for GeneChip® Expression Profiling (pdf, 295 KB)
Annotation Methodology
Array Design and Performance of the GeneChip® Mouse Expression Set 430 (pdf, 575 KB)
Array Design and Performance of the GeneChip® Rat Expression Set 230 (pdf, 554 KB)
Array Design for the Human Exon 1.0 ST Array (pdf, 348 KB)
Array Design for the Human Genome U133 Set (pdf, 18 MB)
Arrays Provide Optimal Sensitivity and Specificity for Microarray Expression Analysis (pdf, 2.26 MB)
Design and Performance of the GeneChip® Human Genome U133 Plus 2.0 and Human Genome U133A 2.0 Array (pdf, 207 KB)
Gene 1.0 ST Array Design (pdf, 324 KB)
GeneChip® Expression Platform: Comparison, Evolution, and Performance (pdf, 269 KB)
Globin Reduction Protocol: A Method for Processing Whole Blood RNA Samples for Improved Array Results (pdf, 522 KB)
Guide to Probe Logarithmic Intensity Error (PLIER) Estimation (pdf, 294 KB)
Human Exon 1.0 ST Array and WT Sense Target Labeling Assay for Genome-Wide, Exon-Level Expression Analysis (pdf, 624 KB)
Identifying and Validating Alternative Splicing Events (pdf, 844 KB)
Performance and Validation of the Human Genome U133 Set (pdf, 42 MB)
Sample Pooling for Microarray Analysis: A Statistical Assessment of Risks and Biases (pdf, 106 KB)
Species - Specific Controls for Custom Expression Array Designs
Manufacturing Quality
Manufacturing Quality Control and Validation Studies of GeneChip® Arrays (pdf, 3.28 MB)
REAGENTS
An Analysis of Blood Processing Methods to Prepare Samples for GeneChip® Expression Profiling (pdf, 295 KB)
Array Design for the Human Exon 1.0 ST Array (pdf, 348 KB)
Human Exon 1.0 ST Array and WT Sense Target Labeling Assay for Genome-Wide, Exon-Level Expression Analysis (pdf, 624 KB)
Identifying and Validating Alternative Splicing Events (pdf, 844 KB)
The New GeneChip® IVT Labeling Kit: Optimized Protocol for Improved Results (pdf, 235 KB)
INSTRUMENTS
Performance Evaluation of the GeneChip® Fluidics Station 450 (pdf, 132 KB)
Performance Review of the GeneChip® Autoloader for the Affymetrix GeneChip® Scanner 3000 (pdf, 1.6 MB)
Scanner 3000: New Advances in Scanner Design (pdf, 192 KB)
Seamless Performance Between GeneChip® Scanner 3000 and GeneArray® 2500 Scanner (pdf, 4.64 MB)
SOFTWARE
Annotation Methodology
Annotation Update Release 20 Description and Notes (July 2006)
Annotation Update Release 21 Description and Notes (November 2006)
Annotation Update Release 22 Description and Notes (March 2007)
Annotation Update Release 23 Description and Notes (July 2007)
Copy Number Analysis Tool (pdf, 2.4 MB)
Copy Number and Genotype Analysis of FFPE-extracted DNA (pdf, 1.21 MB)
Guide to Probe Logarithmic Intensity Error (PLIER) Estimation (pdf, 294 KB)
Human Exon 1.0 ST Array and WT Sense Target Labeling Assay for Genome-Wide, Exon-Level Expression Analysis (pdf, 624 KB)
Installation Verification, AGCC with GTGS 1.6 (pdf, 158 KB)
Installation Verification, GCOS with GTGS 1.6 (pdf, 158 KB)
Microsoft Windows Authentication (pdf, 127 KB)
Microsoft Windows XP SP2 and Firewall Settings for the TG System (pdf, 568 KB)
Symantec Norton AntiVirus Configuration for the TG System (pdf, 614 KB)
TECHNICAL SUPPORT
  United States / Canada
888-DNA-CHIP
(888-362-2447)
e-mail technical support
  Europe
+44 (0) 1628 552550
e-mail technical support
  Japan
+81 3-5730-8222
e-mail technical support
POPULAR DOWNLOADS
Brochure, The GeneChip® System: An Integrated Solution For Expression and DNA Analysis (pdf, 227 KB)
Brochure, RNA Expression Analysis with the GeneChip® System (pdf, 1.3 MB)
Data Sheet, Human Genome Arrays (pdf, 169 KB)
Manual, Expression Analysis Technical Manual
Manual, Data Analysis Fundamentals (pdf, 723 KB)
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