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Library Files
These library files are intended for GeneChip® Operating Software (GCOS), Microarray Suite (MAS), and Expression Console™ Software users. Additional annotation files can be accessed on specific array support pages.
Instructions
WinZip is required for accessing the files. Download and install a free evaluation version of WinZip. Then, download the zipped files to your hard drive using the links below and double click on the downloaded file to open WinZip and begin the installation.
For large files, you may wish to use a free download manager. Simply download the program and double click on the Affymetrix file you wish to access. The manager will allow you to speed up, schedule and pause/resume any downloads from the site.
HT Array Plate Library files
GeneTitan Instrument and AGCC Software
The following HT Array Plate Library files are intended for use with AGCC 2.x and higher for use with the GeneTitan® Instrument. Download the zip file and save the file to a folder on the workstation. Start the GeneTitan library file installer from the AGCC launcher window and set the Source Path in the application to the folder containing the HT Array Plate zip files. Start the install. TPlease note: the data files in the zip should not be extracted or uncompressed. The ZIP file must be saved as is with the .zip extension. Please refer to the AGCC user manual for additional information.
- GeneTitan™ HT HG-U133A Library Files (zip, 11.7 MB)
- GeneTitan™ HT HG-U133B Library Files (zip, 11.2 MB)
- GeneTitan™ HT MG-430A Library Files (zip, 11.6 MB)
- GeneTitan™ HT MG-430B Library Files (zip, 11.2 MB)
- GeneTitan™ HT Rat-Focus Library Files (zip, 12 MB)
HTAPS Scanner and GCOS Software
The following HT Array Plate library files are intended for use with GeneChip Operating Software (GCOS). WinZip is required for accessing the files. Download and install a free evaluation version of WinZip. Then, download the zipped files to your hard drive using the links below and double click on the downloaded file to open WinZip and begin the installation.
- HT HG-U133+ PM Array Plate (zip, 16 MB)
- HT Human Genome U133A (zip, 13 MB)
- HT Human Genome U133B (zip, 13 MB)
- HT MG-430 PM Array Plate (zip, 14 MB)
- HT Mouse Genome 430 (zip, 25 MB)
- HT RG-230 PM Array Plate (zip, 10 MB)
- HT Rat-Focus Array (zip, 14 MB)
GeneChip Cartridge Library Files
WinZip is required for accessing the files. Download and install a free evaluation version of WinZip. Then, download the zipped files to your hard drive using the links below and double click on the downloaded file to open WinZip and begin the installation. For large files, you may wish to use a free download manager. Simply download the program and double click on the Affymetrix file you wish to access. The manager will allow you to speed up, schedule and pause/resume any downloads from the site.
DNA Analysis Arrays
Catalog Arrays
- Alternative CDF Files, Genome-Wide Human SNP Array 5.0 (zip, 70 MB)
- DMET™ Plus Premier Pack (zip, 7.62 MB)
- Genome-Wide Human SNP Array 5.0 (zip, 90 MB)
- Genome-Wide Human SNP Array 6.0 (zip, 246 MB)
- Mapping 10K 2.0 Array (zip, 9.1 MB)
- Mapping 250K Nsp Array (zip, 43 MB)
- Mapping 250K Sty Array (zip, 42 MB)
- Mapping 50K Hind 240 Array (zip, 16 MB)
- Mapping 50K Xba 240 Array (zip, 17 MB)
- Tag 3 Array (zip, 3.3 MB)
- Universal 10K Tag Array (zip, 1.8 MB)
- Universal 25K Tag Array (zip, 1.85 MB)
- Universal 3K Tag Array (zip 1.8 MB)
- Universal 5K Tag Array (zip 1.8 MB)
- Universal 70K Tag Array (zip, 2.16 MB)
Made to Order Array Program
Gene Expression Analysis Arrays
Catalog Arrays
- Arabidopsis ATH1 Genome Array (zip, 13 MB)
- C. elegans Genome Array (zip, 12 MB)
- Drosophila Genome 2.0 Array (zip, 13 MB)
- Drosophila Genome Array (zip, 10 MB)
- Drosophila Tiling 1.0R Array (zip, 124 MB)
- Drosophila Tiling 2.0R Array (zip, 114 MB)
- E. coli Antisense Genome Array (zip, 7.8 MB)
- E.coli Genome 2.0 Array (zip, 7.5 MB)
- P. aeruginosa Genome Array (zip, 5.8 MB)
- Plasmodium/Anopheles Genome Array (zip, 12 MB)
- Vitis vinifera (Grape) Array (zip, 12 MB)
- Xenopus laevis Genome 2.0 Array (zip, 22 MB)
- Xenopus laevis Genome Array (zip, 12 MB)
- Xenopus tropicalis Genome Array (zip, 31 MB)
- Arabidopsis Tiling 1.0R Array (zip, 120 MB)
- Bovine Genome Array (zip, 13MB)
- C. elegans Tiling 1.0R Array (zip, 122 MB)
- Canine 2.0 Genome Array (zip, 22 MB)
- Canine Genome Array (zip, 13 MB)
- Chicken Genome Array Array (zip, 20 MB)
- Chromosome 21/22 1.0 Array Set (zip, 55 MB)
- Chromosome 21/22 2.0R Array (zip 87 MB)
- Citrus Genome Array (zip, 20 MB)
- Cotton Genome Array (zip, 14 MB)
- ENCODE 2.0R Array (zip, 84 MB)
- Expression Console ™ Software Report Controls File
- Expression Console ™ Software Report Controls File
- Expression Console ™ Software Report Controls File Note: This file corrects an error associated with tracking "AFFX-NonspecificGC12_at" as an indicator of background on the array.
- GeneChip Tiling Arrays - Data Analysis Library File Updates
- HT HG-U133+ PM Array Plate (zip, 16 MB)
- HT Human Genome U133A (zip, 13 MB)
- HT Human Genome U133B (zip, 13 MB)
- HT MG-430 PM Array Plate (zip, 14 MB)
- HT Mouse Genome 430 (zip, 25 MB)
- HT RG-230 PM Array Plate (zip, 10 MB)
- HT Rat-Focus Array (zip, 14 MB)
- Human Exon 1.0 ST Array Analysis (zip, 131 MB)
- Human Exon 1.0 ST Array, GCOS (zip, 2.2 MB)
- Human Gene 1.0 ST Array, Analysis (zip, 18 MB)
- Human Gene 1.0 ST Array, GCOS (2.18 MB)
- Human Genome Focus Array (zip, 6.7 MB)
- Human Genome U133 Plus 2.0 Array (zip, 30 MB)
- Human Genome U133 Set (zip, 25 MB)
- Human Genome U133A 2.0 Array (zip, 13 MB)
- Human Promoter 1.0R Array (zip, 132 MB)
- Human Tiling 1.0R Array Set (zip, 1 GB)
- Human Tiling 2.0R Array Set (zip, 1 GB)
- Maize Genome Array (zip, 12 MB)
- Medicago Genome Array (zip, 31 MB)
- MiRNA Array (zip, 4.69 MB)
- Mouse Exon 1.0 ST Array Analysis (zip, 114 MB)
- Mouse Exon 1.0 St Array, GCOS (zip, 2.7 MB)
- Mouse Expression Set 430 (zip, 24 MB)
- Mouse Gene 1.0 ST Array, Analysis (zip, 20 MB)
- Mouse Gene 1.0 ST Array, GCOS (2.3 MB)
- Mouse Genome 430 2.0 Array (zip, 25 MB)
- Mouse Genome 430A 2.0 Array (zip, 13 MB)
- Mouse Promoter 1.0R Array (zip, 131 MB)
- Mouse Tiling 1.1R Array Set (zip, 1.56 GB)
- Mouse Tiling 2.0R Array Set (zip, 1 GB)
- Poplar Genome Array (zip, 30 MB)
- Porcine Genome Array (zip, 13 MB)
- Rat Exon 1.0 ST Array Analysis (zip, 102 MB)
- Rat Exon 1.0 ST Array, GCOS (zip, 3.3 MB)
- Rat Expression Set 230 (zip, 16 MB)
- Rat Gene 1.0 ST Array, Analysis (zip, 19 MB)
- Rat Gene 1.0 ST Array, GCOS (2.4 MB)
- Rat Genome 230 2.0 Array (zip, 17 MB)
- Rat ToxFX 1.0 Array (zip, 3.26 MB)
- Rhesus Macaque Genome Array (zip, 30 MB)
- Rice Genome Array (zip, 29 MB)
- S. cerevisiae Tiling 1.0R Array (zip, 83 MB)
- S. pombe Tiling 1.0FR Array (zip, 24MB)
- Soybean Genome Array (zip, 31 MB)
- Sugar Cane Genome Array (zip, 6 MB)
- Test3 Array (zip, 2.3 MB)
- Tomato Genome Array (zip, 6.6 MB)
- ToxFX Gene List (zip, 170KB)
- Unsupported Human Exon 1.0 ST Array CDF Files (zip, 205 MB)
- Unsupported Human Gene 1.0 ST Array CDF Files (zip, 13 MB)
- Unsupported Mouse Exon 1.0 ST Array CDF File (zip, 98 MB)
- Unsupported Mouse Gene 1.0 ST Array CDF Files (zip, 13 MB)
- Unsupported Rat Exon 1.0 ST Array CDF File (zip, 89 MB)
- Unsupported Rat Gene 1.0 ST Array CDF Files (zip, 12 MB)
- Wheat Genome Array (zip, 28 MB)
- Yeast Genome 2.0 Array (zip, 7.4 MB)
- Yeast Genome S98 Array (zip, 6.61 MB)
- Zebrafish Genome Array (zip, 12 MB)
Made to Order Array Program
- S. aureus Genome Array (zip, 6.9 MB)
- Barley Genome Array (zip, 12 MB)
- Human Genome U95 Av2 Array (zip, 9.8 MB)
- Human Genome U95 Set B-E (zip, 31 MB)
- Human X3P Array (zip, 30 MB)
- Murine Genome U74v2 Set (zip, 23 MB)
- Rat Genome U34 Set (zip, 15 MB)
- Rat Toxicology U34 Array (zip, 2.77 MB)
If you do not see the library file that you require in the above list, please contact Affymetrix Technical Support.
Library File Updaters
GeneChip® Scanner 3000 Library File Updater
To run the GeneChip Rat Expression 230 Arrays, GeneChip Mouse Expression 430 Arrays, or CustomExpress™ Arrays (Formats: 100-2187, 49-5241, 49-7875) on the GeneChip Scanner 3000, you will need to install the library files as usual and then perform a short update to those library files. To learn more, follow the link below.
GeneChip Scanner 3000 Library File Updater
MAS to GCOS Library File Updater (zip, 1.7 MB)
GCOS v1.4 Server with Oracle 10g
To perform a fresh install CustomExpress™ Arrays expression array library files on a GCOS v1.4 Server based on Oracle 10g, you will need to perform a short update to those library file installers and then install the library files as usual. To learn more, follow the link below.
GCOS v1.4 Server with Oracle 10g Library File Updater
