Affymetrix - Library Files Index - Listing of all Current Library Files

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LIBRARY FILES

These library files are intended for GeneChip® Operating Software (GCOS), Microarray Suite (MAS), and Expression Console™ Software users. Additional annotation files can be accessed on specific array support pages.

Instructions

WinZip is required for accessing the files. Download and install a free evaluation version of WinZip. Then, download the zipped files to your hard drive using the links below and double click on the downloaded file to open WinZip and begin the installation.

For large files, you may wish to use a free download manager. Simply download the program and double click on the Affymetrix file you wish to access. The manager will allow you to speed up, schedule and pause/resume any downloads from the site.

DNA ANALYSIS ARRAYS

Catalog Arrays

Alternative CDF Files, Genome-Wide Human SNP Array 5.0 (zip, 70 MB)

CANARY v1.0 Input Files (zip, 107k)

GeneChip® Universal 10K Tag Array (zip, 1.8 MB)

GeneChip® Universal 3K Tag Array (zip 1.8 MB)

Genome-Wide Human SNP Array 5.0 (zip, 90 MB)

Genome-Wide Human SNP Array 6.0 (zip, 246 MB)

Human Mitochondrial Resequencing Array 2.0 (zip, 5.5 MB)

Mapping 10K 2.0 Array (zip, 9.1 MB)

Mapping 250K Nsp Array (zip, 43 MB)

Mapping 250K Sty Array (zip, 42 MB)

Mapping 50K Hind 240 Array (zip, 16 MB)

Mapping 50K Xba 240 Array (zip, 17 MB)

Tag 3 Array (zip, 3.3 MB)

Universal 10K Tag Array (zip, 1.8 MB)

Universal 25K Tag Array (zip, 1.85 MB)

Universal 3K Tag Array (zip 1.8 MB)

Universal 5K Tag Array (zip 1.8 MB)

Universal 70K Tag Array (zip, 2.16 MB)

Made to Order Array Program

SARS Genome Resequencing Array (zip, 4.8 MB)

GENE EXPRESSION ANALYSIS ARRAYS

Catalog Arrays

Arabidopsis ATH1 Genome Array (zip, 13 MB)

C. elegans Genome Array (zip, 12 MB)

Drosophila Genome 2.0 Array (zip, 13 MB)

Drosophila Genome Array (zip, 10 MB)

Drosophila Tiling 1.0R Array (zip, 124 MB)

Drosophila Tiling 2.0R Array (zip, 114 MB)

E. coli Antisense Genome Array (zip, 7.8 MB)

E.coli Genome 2.0 Array (zip, 7.5 MB)

P. aeruginosa Genome Array (zip, 5.8 MB)

Plasmodium/Anopheles Genome Array (zip, 12 MB)

Vitis vinifera (Grape) Array (zip, 12 MB)

Xenopus laevis Genome 2.0 Array (zip, 22 MB)

Xenopus laevis Genome Array (zip, 12 MB)

Xenopus tropicalis Genome Array (zip, 31 MB)

Arabidopsis Tiling 1.0R Array (zip, 120 MB)

Bovine Genome Array (zip, 13MB)

C. elegans Tiling 1.0R Array (zip, 122 MB)

Canine 2.0 Genome Array (zip, 22 MB)

Canine Genome Array (zip, 13 MB)

Chicken Genome Array Array (zip, 20 MB)

Chromosome 21/22 1.0 Array Set (zip, 55 MB)

Chromosome 21/22 2.0R Array (zip 87 MB)

Citrus Genome Array (zip, 20 MB)

Cotton Genome Array (zip, 14 MB)

ENCODE 2.0R Array (zip, 84 MB)

ENCODE01 1.0 Array (zip, 29 MB)

HT Human Genome U133A (zip, 13 MB)

HT Human Genome U133B (zip, 13 MB)

HT Mouse Genome 430 (zip, 25 MB)

HT Rat-Focus Array (zip, 14 MB)

Human Exon 1.0 ST Array Analysis (zip, 131 MB)

Human Exon 1.0 ST Array, GCOS (zip, 2.2 MB)

Human Gene 1.0 ST Array, Analysis (zip, 17 MB)

Human Gene 1.0 ST Array, GCOS (2.18 MB)

Human Genome Focus Array (zip, 6.7 MB)

Human Genome U133 Plus 2.0 Array (zip, 30 MB)

Human Genome U133 Set (zip, 25 MB)

Human Genome U133A 2.0 Array (zip, 13 MB)

Human Promoter 1.0R Array (zip, 132 MB)

Human Tiling 1.0R Array Set (zip, 1 GB)

Human Tiling 2.0R Array Set (zip, 1 GB)

Maize Genome Array (zip, 12 MB)

Medicago Genome Array (zip, 31 MB)

Mouse Exon 1.0 ST Array Analysis (zip, 114 MB)

Mouse Exon 1.0 St Array, GCOS (zip, 2.7 MB)

Mouse Expression Set 430 (zip, 24 MB)

Mouse Gene 1.0 ST Array, Analysis (zip, 18 MB)

Mouse Gene 1.0 ST Array, GCOS (2.3 MB)

Mouse Genome 430 2.0 Array (zip, 25 MB)

Mouse Genome 430A 2.0 Array (zip, 13 MB)

Mouse Promoter 1.0R Array (zip, 131 MB)

Mouse Tiling 1.1R Array Set (zip, 1.56 GB)

Mouse Tiling 2.0R Array Set (zip, 1 GB)

Poplar Genome Array (zip, 30 MB)

Porcine Genome Array (zip, 13 MB)

Rat Exon 1.0 ST Array Analysis (zip, 102 MB)

Rat Exon 1.0 ST Array, GCOS (zip, 3.3 MB)

Rat Expression Set 230 (zip, 16 MB)

Rat Gene 1.0 ST Array, Analysis (zip, 17 MB)

Rat Gene 1.0 ST Array, GCOS (2.4 MB)

Rat Genome 230 2.0 Array (zip, 17 MB)

Rat ToxFX 1.0 Array (zip, 3.26 MB)

Rhesus Macaque Genome Array (zip, 30 MB)

Rice Genome Array (zip, 29 MB)

S. cerevisiae Tiling 1.0R Array (zip, 83 MB)

S. pombe Tiling 1.0FR Array (zip, 24MB)

Soybean Genome Array (zip, 31 MB)

Sugar Cane Genome Array (zip, 6 MB)

Test3 Array (zip, 2.3 MB)

Tomato Genome Array (zip, 6.6 MB)

ToxFX Gene List (zip, 170KB)

Unsupported Human Exon 1.0 ST Array CDF Files (zip, 205 MB)

Unsupported Human Gene 1.0 ST Array CDF Files (zip, 13 MB)

Unsupported Mouse Exon 1.0 ST Array CDF File (zip, 98 MB)

Unsupported Mouse Gene 1.0 ST Array CDF Files (zip, 13 MB)

Unsupported Rat Exon 1.0 ST Array CDF File (zip, 89 MB)

Unsupported Rat Gene 1.0 ST Array CDF Files (zip, 12 MB)

Wheat Genome Array (zip, 28 MB)

Yeast Genome 2.0 Array (zip, 7.4 MB)

Yeast Genome S98 Array (zip, 6.61 MB)

Zebrafish Genome Array (zip, 12 MB)

Made to Order Array Program

Arabidopsis Genome Array (zip, 5.9 MB)

B. subtilis Genome Array (zip, 5.2 MB)

E. coli Genome Array (Sense) (zip, 15 MB)

S. aureus Genome Array (zip, 6.9 MB)

Barley Genome Array (zip, 12 MB)

HuGeneFL Array (zip, 6 MB)

Human Cancer G110 Array (zip, 3.2 MB)

Human Genome U95 Av2 Array (zip, 9.8 MB)

Human Genome U95 Set B-E (zip, 31 MB)

Human X3P Array (zip, 30 MB)

Murine 11K Genome Array (zip, 9.5 MB)

Murine Genome U74v2 Set (zip, 23 MB)

Rat Genome U34 Set (zip, 15 MB)

Rat Neurobiology U34 Array (zip, 2.7 MB)

Rat Toxicology U34 Array (zip, 2.77 MB)

If you do not see the library file that you require in the above list, please contact Affymetrix Technical Support using the contact information on the right side of this page.

LIBRARY FILE UPDATERS

GeneChip® Scanner 3000 Library File Updater

To run the GeneChip Rat Expression 230 Arrays, GeneChip Mouse Expression 430 Arrays, or CustomExpress™ Arrays (Formats: 100-2187, 49-5241, 49-7875) on the GeneChip Scanner 3000, you will need to install the library files as usual and then perform a short update to those library files. To learn more, follow the link below.