SDK File Type Matrix

The following table outlines the parsing support provided by each of the Affymetrix SDK's.

File Type
GCOS COM
GCOS Java JNI
GCOS Java pure
GCOS 1.x C++
Fusion C++
Fusion Java Pure
BAR

X

X

-

X

X

-
BPMAP

X

X

-

X

X

-
Calvin Array

-

-

-

X

X

-
CDF

X

X

X

X

X

X
CEL
(single-channel)

X

X

X

X

X

X
CEL
(multi-channel)

-

-

-

-

X

X
CHP
(expression)

X

X

X

X

X

X
CHP
(genotyping)

X

X

X

X

X

X
CHP (resequencing)

X1

X1

X1

X

X

X
CNCHP

-

-

-

-

X

X
CNVCHP

-

-

-

-

X

X
DAT

X2

X2

X2

-

-

-
DMET.CHP

-

-

-

-

X

X
DTT Array

-

-

-

-

X

-
EXP

X

X

X

X

X

-
GRC

-

-

-

-

X

-
LOHCHP

-

-

-

-

X

X
MSK

-

-

-

X

X

-
PSI

-

-

-

X

X

X

1) GDAS 3.1 EA resequencing CHP files not supported.
2) Not able to parse files larger than ~700MB.

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