Affymetrix® Mouse Diversity Genotyping Array
The Affymetrix® Mouse Diversity Genotyping Array enables researchers to accurately characterize a broad range of mouse strains and their crosses and uncover genetic changes in mouse models of disease.

Affymetrix® Mouse Diversity Genotyping Array enables researchers to accurately characterize a broad range of mouse strains and their crosses and uncover genetic changes in mouse models of disease.
With more than 120 times the number of SNPs of competing products, and an average of 4.3 kilobases (kb) between SNPs, the Mouse Diversity Genotyping Array has greater density and distribution than any other publicly available mouse SNP array.
Mouse Diversity Genotyping Array offers:
- More than 120 times the genotyping power of competing products
- Interrogate more than 623,000 single nucleotide polymorphisms (SNPs)
- More than 100 times the linkage mapping power
- Map to a resolution of 4.3 kb
- The only array with copy number probes
- Explore more than 916,000 non-polymorphic regions targeted to functional elements and regions known to harbor segmental duplications
- High performance metrics for 12 classical inbred laboratory strains and their F1 crosses
- 98.6% call rate
- 99.9% reproducibility
- 99.5% concordance
- < 0.5% error rate
- The broadest coverage of laboratory mouse strains
- Probes represent SNPs derived from 12 classical inbred strains and 7 wild-derived and wild strains
- The most flexible approach
- One array for both classical inbred and wild-derived strains for any mouse genetics application
- The lowest cost per genotype
- Just fractions of a penny per SNP
To download an instructional vignette describing quality control and genotyping call methods, please visit the Affymetrix® Power Tools page. ATP is available via download (used to run a modified BRLMM-P algorithm for genotype calling).
For more information on the design of the array, please see Yang H., et al. A customized and versatile high-density genotyping array for the mouse. Nature Methods 6(9):663-666 (2009).
"For research use only. Not for use in diagnostic procedures."

Data Sheets
Affymetrix® Mouse Diversity Genotyping Array (pdf 1.0 MB)
FAQs
Mouse Diversity Genotyping Array (pdf, 114 KB)
Library Files
Mouse Diversity Genotyping Array, AGCC Library Files (zip, 80.1 MB)
Mouse Diversity Genotyping Array, Analysis Files (zip, 112 MB)
Mouse Diversity Genotyping Array, Annotation Converter (4 KB)
Manuals
Genome-Wide Human SNP Nsp/Sty 6.0 User Guide (pdf, 2.13 MB)
Package Inserts
Genome-Wide Human SNP Nsp/Sty Assay Kit 6.0 (pdf, 76 KB)
Mouse Diversity Genotyping Array (pdf, 72 KB)
Quick Reference Cards
SNP 6.0 Protocol for 48 Samples (pdf, 484 KB)
SNP 6.0 Protocol for 96 Samples (pdf, 503 KB)
Safety Data Sheets
Genome-Wide SNP 5.0/6.0 Assay Kits, without Reference DNA (zip, 292 KB)
Genome-Wide Human SNP 5.0/6.0 Assay Kits, with Reference DNA (zip, 333 KB)
Sample Data
Mouse Diversity Genotyping Array, Sample Data 1 of 5 (zip, 898 MB)
Mouse Diversity Genotyping Array, Sample Data 2 of 5 (zip, 897 MB)
Mouse Diversity Genotyping Array, Sample Data 3 of 5 (zip, 912 MB)
Mouse Diversity Genotyping Array, Sample Data 4 of 5 (zip, 902 MB)
Mouse Diversity Genotyping Array, Sample Data 5 of 5 (zip, 861 MB)
Other
Genotype and QC Sample Output Files (zip, 131 MB)
Genotype and QC Support Files (zip, 112 MB)
NetAffx Annotation Files
MOUSEDIVm520650 Annotations, SQLite Format, Release 32 (64.5 MB 10/25/11)
MOUSEDIVm520650 Annotations, CSV format, Release 32 (39.5 MB 10/25/11)
MOUSEDIVm520650 CN Annotations, CSV format, Release 32 (35.4 MB 10/25/11)
Sequence Files
MOUSEDIVm520650 CN Probe Sequences, tabular format (30 MB 12/01/10)
MOUSEDIVm520650 Probe Sequences, tabular format (47 MB 12/01/10)
MOUSEDIVm520650 Probe Sequences, tabular format (47 MB 11/17/09)
MOUSEDIVm520650 CN Probe Sequences, tabular format (30 MB 11/17/09)
Archived NetAffx Annotation Files
MOUSEDIVm520650 Annotations, SQLite Format, Release 31 (84 MB 03/16/11)
MOUSEDIVm520650 Annotations, CSV format, Release 31 (36 MB 08/30/10)
MOUSEDIVm520650 CN Annotations, CSV format, Release 31 (37 MB 08/30/10)
MOUSEDIVm520650 Annotations, CSV format, Release 30 (37 MB 11/17/09)
MOUSEDIVm520650 CN Annotations, CSV format, Release 30 (39 MB 01/14/10)
MOUSEDIVm520650 Annotations, CSV format, Release 29 (32 MB 09/24/09)

Required Products

