NetAffx™ Analysis Center

Sign In to Access NetAffx

Sign in here. Fields are case sensitive.

Get unprecedented access to array content.

The NetAffx™ Analysis Center enables researchers to correlate their GeneChip® array results with array design and annotation information.


  • NetAffx Query Search transcript clusters and probe sets for a particular term or identifier
  • Batch Query Retrieve annotations for a probe list
  • Probe Match Find probe sets that identically match a nucleotide sequence(s)
  • NetAffx Query - Search probe sets for a term or identifier
  • Batch Query - Retrieve annotations for a probe list
  • BLAST - Find probe sets that BLAST align to your sequence(s) through BLAST
  • Probe Match - Find probes that identically match your sequence(s)
  • UCSC Query - Query the UCSC Browser including a custom track for your array of interest.
  • NetAffx Query - Search probe sets for a term or identifier
  • Batch Query - Retrieve annotations for a probe list
  • LD Mapper - Evaluate GenomeWideSNP arrays coverage for your list of rsIDs, genes, or genomic regions
  • UCSC Query - Query the UCSC public genome by position
  • SNP Finder - Search for SNPs between microsatellites

Announcements

New releases, product support, applications

For an archival listing of NetAffx Announcements click here

June 17th, 2009

MoGene and RaGene library file update

New Mouse and Rat r4 analysis files were updated to remove a single (non end-user) control probeset from pgf, ps and mps files. This probeset contained probes that had GC-counts of 1 and 2, for which there is no matching GC background control (antigenomic) bin. This caused the dabg option (only in APT, not EC) to fail the step that verifies the existence of a matching GC bin.

May 6th, 2009

Cytogenetics Array Support Live on NetAffx

Single Gene level, High Density Cytogenetics through the Cytogenetics Whole Genome 2.7M Array is live today on NetAffx. Search through all 2.7 million markers on line. Comprehensive whole genome coverage for detection of chromosomal duplications or deletions.

Cytogenetics Array Coverage of MEST Or Browse the Cytogenetics Array content on UCSC with our custom CytoGenetics Array Track.

March 23rd, 2009

NetAffx Annotation Update 28 Available.
Annotations for all catalog arrays are updated and available for all Affymetrix Catalog IVT, Gene, Exon and Mapping Arrays.
This Annotation Update features online support of Exon Level Probe sets for Gene Arrays, including updated genome browser tracks for all WT Array products. Xenopus laevis 2 IVT Array content is also now searchable online.
Documentation of this Update's Contributing Source can be found here.

Resources and Help

Selected resources and documentation for getting the most out of the NetAffx™ Analysis Center

NetAffx Help Center
The complete index of documentation available for NetAffx users. Including:

Sources for NetAffx Annotation Updates See documentation for sources and versions of data that went into the annotation updates.

NetAffx FAQ

Glossaries of Annotation Terms (3'IVT Expression, WT Expression, Genotyping)

Whitepapers